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  1. Hace 1 día · Each symbol represents one donor. Stimulations are represented with shapes (ellipse = unstimulated, square = LPS). (B) Volcano plots showing log2 fold change (x-axis) and significance (−log10 *p-value; y-axis) of genes differentially expressed comparing LPS-stimulated vs. unstimulated (Unstim) StdMo, PdMo, or PdMo + Plts.

  2. Hace 14 horas · A volcano plot is commonly employed in differential experiments, particularly in metabonomics studies, to illustrate differential expression patterns. It utilizes fold change on the x-axis ...

  3. Hace 14 horas · Volcano plot showed the significant difference in DEGs profiles between the two groups. B Receiver operating characteristic (ROC) curves and time-dependent area under the curve (AUC) analysis with the diagnostic value of LGMN for osteosarcoma. C The effect of LGMN on the overall survival (OS) of osteosarcoma was found to be statistically ...

  4. Hace 6 días · Objectives. Manipulate data types inside your phyloseq object. Extract specific information from taxonomic-assignation data. Explore our samples at specific taxonomic levels.

  5. Hace 2 días · Volcano plot of differentially abundant proteins. Volcano plot representing each protein with a dot. The “x” axis represents the log 2 FC between CAS and NFD and the “y” axis represents the p-value (−log 10). The dashed lines indicate the significance limit in the p-value and FC. Gray dots represent proteins with non-significant ...

  6. Hace 1 día · This function allows users to create boxplots, violin plots or dot plots for the expression values of a gene of interest across all GTEx tissues. Users can also decide to add primary tumor sample expression values of a specific cancer type to the plot, facilitating the expression comparison between primary tumor samples and each GTEx tissue.

  7. Hace 4 días · The volcanic plot analysis indicated that curcumin treatment upregulated 1564 genes and downregulated 117 genes (Figure 3B). The GO and KEGG pathway analyses suggested that curcumin improves seminal vesicle secretory dysfunctions in diabetic rats through processes involving cell growth and death, particularly pertinent to type 1 diabetes ...

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