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22 de ene. de 2018 · Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka (Seemann, 2014)) and calculates the pan genome.
Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the ...
Rapid large-scale prokaryote pan genome analysis. Contribute to sanger-pathogens/Roary development by creating an account on GitHub.
15 de nov. de 2015 · We introduce Roary, a tool that rapidly builds large-scale pan genomes, identifying the core and accessory genes. Roary makes construction of the pan genome of thousands of prokaryote samples possible on a standard desktop without compromising on the accuracy of results.
Rapid large-scale prokaryote pan genome analysis. Contribute to sanger-pathogens/Roary development by creating an account on GitHub.
20 de jul. de 2015 · Roary is a Perl-based software that rapidly builds large-scale pan genomes from annotated de novo assemblies of related prokaryotic isolates. It uses a combination of CD-HIT, BLAST and MCL to cluster genes and identify the core and accessory genome.
17 de dic. de 2019 · This protocol presents the usage of Roary, a Linux-native pangenome application. Roary is a straightforward software that provides 1) an overview about core and accessory genes for those interested in general trends and, also, 2) detailed information on gene presence/absence in each genome for in-depth analyses.
